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  5. KNA55288

KNA55288 (VCV51_033101)


Aliases : VCV51_033101

Description : THUMP domain-containing protein [Ensembl]. THUMP domain, Putative RNA methylase family UPF0020, S-adenosylmethionine-dependent methyltransferase [Interproscan].


Gene families : OG_02_0000755 (OrthoFinder) Phylogenetic Tree(s): OG0000755_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA55288
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AAC74034 rlmL, b0948 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases,... 0.09 OrthoFinder
AAL19994 STM1061, ycbY putative N6-adenine-specific DNA methylase [Ensembl].... 0.07 OrthoFinder
AGT24962 N559_3304 23S rRNA m(2)G2445 methyltransferase [Ensembl]. THUMP... 0.09 OrthoFinder
AKI49881 L2625_02030 RNA methylase domain protein [Ensembl]. Putative RNA... 0.04 OrthoFinder
AKP14571 rlmL, WX61_00490 Ribosomal RNA large subunit methyltransferase L... 0.04 OrthoFinder
CCG26467 No alias FIG001721: Predicted N6-adenine-specific DNA methylase... 0.03 OrthoFinder
CPC75686 rlmL, ERS093114_01210 N6-adenine-specific DNA methylase [Ensembl]. THUMP... 0.06 OrthoFinder
CRO64256 rlmL Ribosomal RNA large subunit methyltransferase K/L... 0.07 OrthoFinder
EDJ90794 CGSHi22421_00480 predicted methyltransferase [Ensembl]. THUMP domain,... 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0004810 tRNA adenylyltransferase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
CC GO:0009317 acetyl-CoA carboxylase complex IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0031554 regulation of DNA-templated transcription, termination IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
MF GO:0070402 NADPH binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
MF GO:1990817 RNA adenylyltransferase activity IEP Enrichment
InterPro domains Description Start Stop
IPR004114 THUMP_dom 31 153
IPR000241 RNA_methylase_dom 162 374
IPR019614 SAM-dep_methyl-trfase 435 663
No external refs found!