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  5. AEA93946

AEA93946 (rluB, OG1RF_11259)


Aliases : rluB, OG1RF_11259

Description : ribosomal large subunit pseudouridine synthase B [Ensembl]. S4 domain, RNA pseudouridylate synthase [Interproscan].


Gene families : OG_02_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AEA93946
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AAL20637 STM1719, yciL putative ribosomal large subunit pseudouridine synthase... 0.03 OrthoFinder
AAL21125 STM2222, rsuA 16S rRNA pseudouridylate 516 synthase [Ensembl]. S4... 0.03 OrthoFinder
AGT23383 N559_1637 16S rRNA pseudouridylate synthase A [Ensembl]. S4 domain... 0.04 OrthoFinder
AGT24675 N559_3012 23S rRNA pseudouridylate synthase B [Ensembl]. S4 domain... 0.02 OrthoFinder
AHY40894 CJ8421_08610 putative ribosomal pseudouridine synthase [Ensembl]. S4... 0.03 OrthoFinder
AKI49944 rluB, L2625_02096 ribosomal large subunit pseudouridine synthase B... 0.07 OrthoFinder
AKP14134 rluB, WX61_00045 Ribosomal large subunit pseudouridine synthase B... 0.03 OrthoFinder
CCL19689 rluA, BN171_340006 Ribosomal small subunit pseudouridine synthase A... 0.03 OrthoFinder
EDJ90671 CGSHi22421_04158 predicted methyltransferase [Ensembl]. S4 domain, RNA... 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0004810 tRNA adenylyltransferase activity IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006304 DNA modification IEP Enrichment
BP GO:0006305 DNA alkylation IEP Enrichment
BP GO:0006306 DNA methylation IEP Enrichment
BP GO:0006353 DNA-templated transcription, termination IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0018580 nitronate monooxygenase activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032506 cytokinetic process IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
MF GO:0043772 acyl-phosphate glycerol-3-phosphate acyltransferase activity IEP Enrichment
BP GO:0044728 DNA methylation or demethylation IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
BP GO:0090529 cell septum assembly IEP Enrichment
MF GO:1990817 RNA adenylyltransferase activity IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 2 48
IPR006145 PsdUridine_synth_RsuA/RluA 62 196
No external refs found!