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  5. AHY40457

AHY40457 (CJ8421_06250)


Aliases : CJ8421_06250

Description : polynucleotide phosphorylase/polyadenylase [Ensembl]. KH domain, S1 RNA binding domain, 3' exoribonuclease family, Polyribonucleotide nucleotidyltransferase [Interproscan].


Gene families : OG_02_0000552 (OrthoFinder) Phylogenetic Tree(s): OG0000552_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AHY40457
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AAL22154 STM3282, pnp polynucleotide phosphorylase [Ensembl]. KH domain, S1... 0.03 OrthoFinder
AKP15710 pnp, WX61_01675 Polyribonucleotide nucleotidyltransferase [Ensembl]. KH... 0.03 OrthoFinder
CCL17488 pnp, BN171_1520006 Polyribonucleotide nucleotidyltransferase [Ensembl]. KH... 0.03 OrthoFinder
CRO21175 pnp Polyribonucleotide nucleotidyltransferase [Ensembl]. KH... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016151 nickel cation binding IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP Enrichment
MF GO:0048038 quinone binding IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR015848 PNPase_PH_RNA-bd_bac/org-type 265 341
IPR004088 KH_dom_type_1 578 634
IPR015847 ExoRNase_PH_dom2 481 550
IPR015847 ExoRNase_PH_dom2 142 233
IPR003029 S1_domain 656 716
IPR001247 ExoRNase_PH_dom1 344 477
IPR001247 ExoRNase_PH_dom1 19 139
No external refs found!