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  5. CBI66007

CBI66007 (rpsA, HPB8_450)


Aliases : rpsA, HPB8_450

Description : small subunit ribosomal protein S1 [Ensembl]. S1 RNA binding domain [Interproscan].


Gene families : OG_02_0000539 (OrthoFinder) Phylogenetic Tree(s): OG0000539_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CBI66007
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AAC73997 rpsA, b0911 30S ribosomal subunit protein S1 [Ensembl]. S1 RNA... 0.09 OrthoFinder
AAK99568 spr0764, rpsA 30S Ribosomal protein S1 [Ensembl]. S1 RNA binding... 0.06 OrthoFinder
AAL19915 STM0981, rpsA 30S ribosomal subunit protein S1 [Ensembl]. S1 RNA... 0.07 OrthoFinder
AGT24996 N559_3340 30S ribosomal protein S1 [Ensembl]. S1 RNA binding... 0.05 OrthoFinder
AHY40107 rpsA, CJ8421_04420 30S ribosomal protein S1 [Ensembl]. S1 RNA binding... 0.05 OrthoFinder
AKP14185 rpsA, WX61_00096 30S ribosomal protein S1 [Ensembl]. S1 RNA binding... 0.05 OrthoFinder
CCG26736 No alias SSU ribosomal protein S1p [Ensembl]. S1 RNA binding... 0.04 OrthoFinder
CCP44394 rpsA, Rv1630 30S ribosomal protein S1 RpsA [Ensembl]. S1 RNA binding... 0.05 OrthoFinder
CRO41659 rpsA 30S ribosomal protein S1 [Ensembl]. S1 RNA binding... 0.08 OrthoFinder
EDJ90972 rpsA, CGSHi22421_02581 30S ribosomal protein S1 [Ensembl]. S1 RNA binding... 0.04 OrthoFinder
KNA59407 VCV51_032586 ribosomal protein S1 [Ensembl]. S1 RNA binding domain... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004176 ATP-dependent peptidase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0030258 lipid modification IEP Enrichment
BP GO:0030259 lipid glycosylation IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Enrichment
BP GO:0046034 ATP metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR003029 S1_domain 457 523
IPR003029 S1_domain 119 183
IPR003029 S1_domain 207 272
IPR003029 S1_domain 286 359
IPR003029 S1_domain 372 444
UniProtKB D7FCV0