AGT24683 (N559_3020)


Aliases : N559_3020

Description : tryptophan synthase subunit alpha [Ensembl].


Gene families : OG_02_0000714 (OrthoFinder) Phylogenetic Tree(s): OG0000714_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT24683
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AAC74342 trpA, b1260 tryptophan synthase, alpha subunit [Ensembl]. Tryptophan... 0.06 OrthoFinder
AAL00434 spr1631, trpA Tryptophan synthase alpha chain [Ensembl]. Tryptophan... 0.04 OrthoFinder
AAL20645 STM1727, trpA tryptophan synthase, alpha protein [Ensembl]. Tryptophan... 0.15 OrthoFinder
AHY39605 trpA, CJ8421_01750 tryptophan synthase subunit alpha [Ensembl]. Tryptophan... 0.03 OrthoFinder
AKI49624 trpA, L2625_01734 tryptophan synthase, alpha subunit [Ensembl]. Tryptophan... 0.07 OrthoFinder
CCP44377 trpA, Rv1613 Probable tryptophan synthase, alpha subunit TrpA... 0.03 OrthoFinder
CPC32416 trpA, ERS093114_00043 tryptophan synthase subunit alpha [Ensembl]. Tryptophan... 0.2 OrthoFinder
CRP69127 trpA Tryptophan synthase alpha chain [Ensembl]. Tryptophan... 0.03 OrthoFinder
EDJ91075 CGSHi22421_10052 tryptophan synthase subunit alpha [Ensembl]. Tryptophan... 0.13 OrthoFinder
KNA53894 VCV51_030823 tryptophan synthase subunit alpha [Ensembl]. Tryptophan... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004834 tryptophan synthase activity IEA Interproscan
BP GO:0006568 tryptophan metabolic process IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0004640 phosphoribosylanthranilate isomerase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR002028 Trp_synthase_suA 8 266
No external refs found!