AKI50171 (L2625_02335)

Aliases : L2625_02335

Description : sigma-54 dependent transcriptional regulator [Ensembl]. RNA polymerase sigma factor 54 interaction domain, DNA binding HTH domain [Interproscan].

Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AKI50171
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AAC74405	tyrR, b1323	aromatic amino acid biosynthesis and transport regulon...	0.03	OrthoFinder
AGT22853	N559_1079	sigma-54 dependent transcriptional regulator [Ensembl]....	0.05	OrthoFinder
AGT22959	N559_1193	anaerobic nitric oxide reductase transcription regulator...	0.03	OrthoFinder
AGT23137	N559_1375	putative 2-component transcriptional regulator...	0.04	OrthoFinder
CCL18448	BN171_2340008	Transcriptional regulator, sigma-54-dependent [Ensembl]....	0.05	OrthoFinder
CCL19165	BN171_2900020	Transcriptional regulator, sigma-54 dependent [Ensembl]....	0.04	OrthoFinder
CRN65608	qseF	Quorum-sensing regulator protein F [Ensembl]. Sigma-54...	0.02	OrthoFinder
KNA55086	VCV51_031847	nitrogen regulation protein NR(I) [Ensembl]. Sigma-54...	0.03	OrthoFinder
KNA60650	VCV51_032089	sigma-54 interaction domain-containing protein...	0.02	OrthoFinder
KNA60791	VCV51_032053	sigma-54 interaction domain-containing protein...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
MF	GO:0008134	transcription factor binding	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Enrichment
BP	GO:0000160	phosphorelay signal transduction system	IEP	Enrichment
MF	GO:0003824	catalytic activity	IEP	Enrichment
MF	GO:0004668	protein-arginine deiminase activity	IEP	Enrichment
MF	GO:0004672	protein kinase activity	IEP	Enrichment
MF	GO:0004673	protein histidine kinase activity	IEP	Enrichment
MF	GO:0004764	shikimate 3-dehydrogenase (NADP+) activity	IEP	Enrichment
BP	GO:0006595	polyamine metabolic process	IEP	Enrichment
BP	GO:0006596	polyamine biosynthetic process	IEP	Enrichment
BP	GO:0007165	signal transduction	IEP	Enrichment
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Enrichment
BP	GO:0009309	amine biosynthetic process	IEP	Enrichment
BP	GO:0009445	putrescine metabolic process	IEP	Enrichment
BP	GO:0009446	putrescine biosynthetic process	IEP	Enrichment
BP	GO:0016043	cellular component organization	IEP	Enrichment
MF	GO:0016491	oxidoreductase activity	IEP	Enrichment
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Enrichment
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Enrichment
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Enrichment
MF	GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	IEP	Enrichment
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Enrichment
MF	GO:0019842	vitamin binding	IEP	Enrichment
MF	GO:0030170	pyridoxal phosphate binding	IEP	Enrichment
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Enrichment
MF	GO:0032977	membrane insertase activity	IEP	Enrichment
BP	GO:0035556	intracellular signal transduction	IEP	Enrichment
BP	GO:0042401	cellular biogenic amine biosynthetic process	IEP	Enrichment
MF	GO:0043546	molybdopterin cofactor binding	IEP	Enrichment
BP	GO:0045229	external encapsulating structure organization	IEP	Enrichment
BP	GO:0055114	obsolete oxidation-reduction process	IEP	Enrichment
MF	GO:0070279	vitamin B6 binding	IEP	Enrichment
BP	GO:0071554	cell wall organization or biogenesis	IEP	Enrichment
BP	GO:0071555	cell wall organization	IEP	Enrichment
BP	GO:0071840	cellular component organization or biogenesis	IEP	Enrichment
MF	GO:0140104	molecular carrier activity	IEP	Enrichment
MF	GO:0140299	small molecule sensor activity	IEP	Enrichment
MF	GO:0140597	protein carrier activity	IEP	Enrichment
MF	GO:1901681	sulfur compound binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002078	Sigma_54_int	150	316
IPR002197	HTH_Fis	414	452

External Links

No external refs found!

AKI50171 (L2625_02335)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation