AKP14134 (rluB, WX61_00045)


Aliases : rluB, WX61_00045

Description : Ribosomal large subunit pseudouridine synthase B [Ensembl]. S4 domain, RNA pseudouridylate synthase [Interproscan].


Gene families : OG_02_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AKP14134
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AAC74351 rluB, b1269 23S rRNA pseudouridine(2605) synthase [Ensembl]. S4... 0.05 OrthoFinder
AAL00492 spr1689, rluB Ribosomal large subunit pseudouridine synthase B... 0.02 OrthoFinder
AAL20637 STM1719, yciL putative ribosomal large subunit pseudouridine synthase... 0.04 OrthoFinder
AAL21125 STM2222, rsuA 16S rRNA pseudouridylate 516 synthase [Ensembl]. S4... 0.03 OrthoFinder
AEA93088 rsuA, OG1RF_10401 ribosomal small subunit pseudouridine synthase A... 0.05 OrthoFinder
AEA93946 rluB, OG1RF_11259 ribosomal large subunit pseudouridine synthase B... 0.03 OrthoFinder
AGT24675 N559_3012 23S rRNA pseudouridylate synthase B [Ensembl]. S4 domain... 0.03 OrthoFinder
AKI49944 rluB, L2625_02096 ribosomal large subunit pseudouridine synthase B... 0.03 OrthoFinder
CCG27619 No alias Ribosomal small subunit pseudouridine synthase A... 0.03 OrthoFinder
CCL18388 rluB, BN171_2280004 Ribosomal large subunit pseudouridine synthase B... 0.02 OrthoFinder
CCL19689 rluA, BN171_340006 Ribosomal small subunit pseudouridine synthase A... 0.03 OrthoFinder
CPC79209 rluB, ERS093114_01325 Ribosomal large subunit pseudouridine synthase B... 0.04 OrthoFinder
CPD29064 rsuA, ERS093114_02486 16S pseudouridine synthase A [Ensembl]. S4 domain, RNA... 0.03 OrthoFinder
EDJ91000 CGSHi22421_02721 16S pseudouridylate 516 synthase [Ensembl]. S4 domain,... 0.05 OrthoFinder
KNA51668 VCV51_031493 RNA pseudouridylate synthase [Ensembl]. S4 domain, RNA... 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003919 FMN adenylyltransferase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004325 ferrochelatase activity IEP Enrichment
MF GO:0004448 isocitrate dehydrogenase activity IEP Enrichment
MF GO:0004450 isocitrate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004817 cysteine-tRNA ligase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006555 methionine metabolic process IEP Enrichment
BP GO:0006766 vitamin metabolic process IEP Enrichment
BP GO:0006767 water-soluble vitamin metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006783 heme biosynthetic process IEP Enrichment
MF GO:0008531 riboflavin kinase activity IEP Enrichment
BP GO:0008614 pyridoxine metabolic process IEP Enrichment
BP GO:0008615 pyridoxine biosynthetic process IEP Enrichment
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Enrichment
BP GO:0009110 vitamin biosynthetic process IEP Enrichment
BP GO:0009254 peptidoglycan turnover IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016744 transketolase or transaldolase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Enrichment
MF GO:0033856 pyridoxine 5'-phosphate synthase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Enrichment
BP GO:0042816 vitamin B6 metabolic process IEP Enrichment
BP GO:0042819 vitamin B6 biosynthetic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043094 cellular metabolic compound salvage IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043174 nucleoside salvage IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
BP GO:1990397 queuosine salvage IEP Enrichment
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 97 142
IPR006145 PsdUridine_synth_RsuA/RluA 160 293
No external refs found!