AHY39280 (gyrB, CJ8421_00015)

Aliases : gyrB, CJ8421_00015

Description : DNA gyrase subunit B [Ensembl]. Toprim domain, Histidine kinase-, DNA gyrase B subunit [Interproscan].

Gene families : OG_02_0000123 (OrthoFinder) Phylogenetic Tree(s): OG0000123_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AHY39280
Cluster	HCCA: Cluster_8

Target	Alias	Description	ECC score	Gene Family Method
AAL22055	STM3181, parE	DNA topoisomerase IV, subunit B [Ensembl]. Toprim...	0.03	OrthoFinder
AAL22694	STM3835, gyrB	DNA gyrase, subunit B [Ensembl]. Toprim domain,...	0.06	OrthoFinder
AGT21871	N559_0038	DNA gyrase subunit B [Ensembl]. DNA gyrase B subunit...	0.05	OrthoFinder
AKI47982	gyrB, L2625_00006	DNA gyrase, B subunit [Ensembl]. DNA topoisomerase,...	0.03	OrthoFinder
AKI49282	parE, L2625_01376	DNA topoisomerase IV, B subunit [Ensembl]. DNA...	0.05	OrthoFinder
AKP15193	gyrB, WX61_01144	DNA gyrase subunit B [Ensembl]. Toprim domain, Histidine...	0.05	OrthoFinder
CBI66243	gyrB, HPB8_686	DNA gyrase, B subunit [Ensembl]. Toprim domain,...	0.05	OrthoFinder
CCL16917	gyrB, BN171_10005	DNA gyrase subunit B [Ensembl]. DNA gyrase B, Toprim...	0.03	OrthoFinder
CRO55054	parE	DNA topoisomerase 4 subunit B [Ensembl]. Toprim domain,...	0.05	OrthoFinder
CRP69988	gyrB	DNA gyrase subunit B [Ensembl]. Toprim domain, Histidine...	0.07	OrthoFinder
KNA50940	VCV51_033648	DNA topoisomerase IV [Ensembl]. Toprim domain, Histidine...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	None	Extended
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATPase, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016887	ATPase	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Enrichment
MF	GO:0003883	CTP synthase activity	IEP	Enrichment
MF	GO:0004129	cytochrome-c oxidase activity	IEP	Enrichment
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	Enrichment
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Enrichment
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Enrichment
BP	GO:0006399	tRNA metabolic process	IEP	Enrichment
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Enrichment
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Enrichment
BP	GO:0008643	carbohydrate transport	IEP	Enrichment
MF	GO:0008685	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity	IEP	Enrichment
MF	GO:0009055	electron transfer activity	IEP	Enrichment
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	Enrichment
MF	GO:0015159	polysaccharide transmembrane transporter activity	IEP	Enrichment
BP	GO:0015774	polysaccharide transport	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
MF	GO:0016491	oxidoreductase activity	IEP	Enrichment
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Enrichment
MF	GO:0016675	oxidoreductase activity, acting on a heme group of donors	IEP	Enrichment
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	Enrichment
MF	GO:0016849	phosphorus-oxygen lyase activity	IEP	Enrichment
MF	GO:0016874	ligase activity	IEP	Enrichment
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Enrichment
BP	GO:0017038	protein import	IEP	Enrichment
BP	GO:0018193	peptidyl-amino acid modification	IEP	Enrichment
BP	GO:0018208	peptidyl-proline modification	IEP	Enrichment
MF	GO:0020037	heme binding	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
BP	GO:0043038	amino acid activation	IEP	Enrichment
BP	GO:0043039	tRNA aminoacylation	IEP	Enrichment
MF	GO:0046906	tetrapyrrole binding	IEP	Enrichment
MF	GO:0048038	quinone binding	IEP	Enrichment
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Enrichment
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	Enrichment
MF	GO:0070567	cytidylyltransferase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002288	DNA_gyrase_B_C	697	758
IPR013506	Topo_IIA_bsu_dom2	219	386
IPR006171	TOPRIM_domain	415	525
IPR003594	HATPase_C	32	173

External Links

No external refs found!

AHY39280 (gyrB, CJ8421_00015)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation