1. Home
  2. Species
  3. Salmonella enterica
  4. Sequence
  5. AAL19918

AAL19918 (STM0984, msbA)


Aliases : STM0984, msbA

Description : multicopy repressor of htrB transport protein; ABC superfamily (atp&membrane) [Ensembl]. ABC transporter transmembrane region [Interproscan].


Gene families : OG_02_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL19918
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AAC74000 msbA, b0914 lipid ABC transporter permease/ATPase [Ensembl]. ABC... 0.15 OrthoFinder
AAL00020 spr1216, ABC-N/P ABC transporter ATP-binding/membrane-spanning... 0.02 OrthoFinder
AAL00460 spr1657, ABC-N/P ABC transporter ATP-binding/membrane spanning... 0.02 OrthoFinder
AAL00689 spr1887, ABC-NP ABC transporter ATP-binding/membrane spanning... 0.03 OrthoFinder
AEA93356 OG1RF_10669 ABC superfamily ATP binding cassette transporter,... 0.03 OrthoFinder
AEA94129 mdlB, OG1RF_11442 multidrug ABC superfamily ATP binding cassette... 0.01 OrthoFinder
AEA94130 mdlA, OG1RF_11443 multidrug ABC superfamily ATP binding cassette... 0.01 OrthoFinder
AGT24993 N559_3337 lipid transporter ATP-binding/permease protein... 0.12 OrthoFinder
AKI48785 L2625_00857 ABC transporter, ATP-binding/permease protein [Ensembl].... 0.03 OrthoFinder
AKP14872 WX61_00805 Putative multidrug export ATP-binding/permease protein... 0.03 OrthoFinder
AKP15308 msbA, WX61_01259 Lipid A export ATP-binding/permease protein MsbA... 0.02 OrthoFinder
CCL19309 BN171_3020021 ABC-type transport system, multidrug-family... 0.05 OrthoFinder
CCL19310 BN171_3020022 ABC-type transport system, multidrug-family... 0.06 OrthoFinder
CPD01712 ERS093114_01834 Lipid A export ATP-binding/permease protein MsbA... 0.03 OrthoFinder
CRN70466 bmrA Multidrug resistance ABC transporter... 0.03 OrthoFinder
CRO55966 msbA Lipid A export ATP-binding/permease protein MsbA... 0.06 OrthoFinder
KNA59439 VCV51_031273, MsbA lipid A export permease/ATP-binding protein MsbA... 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000270 peptidoglycan metabolic process IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0003919 FMN adenylyltransferase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006022 aminoglycan metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008144 drug binding IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0008531 riboflavin kinase activity IEP Enrichment
MF GO:0008658 penicillin binding IEP Enrichment
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP Enrichment
BP GO:0009254 peptidoglycan turnover IEP Enrichment
CC GO:0009295 nucleoid IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016849 phosphorus-oxygen lyase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0030203 glycosaminoglycan metabolic process IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
MF GO:0033293 monocarboxylic acid binding IEP Enrichment
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
MF GO:0070567 cytidylyltransferase activity IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 27 297
IPR003439 ABC_transporter-like_ATP-bd 359 509
No external refs found!