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  5. CPD01712

CPD01712 (ERS093114_01834)


Aliases : ERS093114_01834

Description : Lipid A export ATP-binding/permease protein MsbA [Ensembl]. ABC transporter transmembrane region [Interproscan].


Gene families : OG_02_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CPD01712
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AAL00687 spr1885, ABC-NP ABC transporter ATP-binding/membrane spanning... 0.05 OrthoFinder
AAL00689 spr1887, ABC-NP ABC transporter ATP-binding/membrane spanning... 0.06 OrthoFinder
AAL19918 STM0984, msbA multicopy repressor of htrB transport protein; ABC... 0.03 OrthoFinder
AEA93356 OG1RF_10669 ABC superfamily ATP binding cassette transporter,... 0.04 OrthoFinder
AEA94129 mdlB, OG1RF_11442 multidrug ABC superfamily ATP binding cassette... 0.01 OrthoFinder
AEA94130 mdlA, OG1RF_11443 multidrug ABC superfamily ATP binding cassette... 0.01 OrthoFinder
AEA94658 OG1RF_11971 multidrug resistance ABC superfamily ATP binding... 0.04 OrthoFinder
AGT24993 N559_3337 lipid transporter ATP-binding/permease protein... 0.03 OrthoFinder
AKI48785 L2625_00857 ABC transporter, ATP-binding/permease protein [Ensembl].... 0.04 OrthoFinder
AKP14872 WX61_00805 Putative multidrug export ATP-binding/permease protein... 0.05 OrthoFinder
CRO55966 msbA Lipid A export ATP-binding/permease protein MsbA... 0.02 OrthoFinder
CRP79231 No alias Putative multidrug export ATP-binding/permease protein... 0.02 OrthoFinder
KNA52473 VCV51_030135 ABC-type multidrug efflux pump [Ensembl]. ABC... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Enrichment
MF GO:0004150 dihydroneopterin aldolase activity IEP Enrichment
MF GO:0004325 ferrochelatase activity IEP Enrichment
MF GO:0004803 transposase activity IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0070525 tRNA threonylcarbamoyladenosine metabolic process IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 17 294
IPR003439 ABC_transporter-like_ATP-bd 357 506
No external refs found!