Coexpression cluster: Cluster_18 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016987 sigma factor activity 6.09% (7/115) 4.63 0.0 1e-06
GO:0006352 DNA-templated transcription, initiation 6.09% (7/115) 4.46 0.0 1e-06
GO:0032774 RNA biosynthetic process 6.09% (7/115) 4.05 0.0 8e-06
GO:0034654 nucleobase-containing compound biosynthetic process 6.09% (7/115) 3.02 2.1e-05 0.000986
GO:0019438 aromatic compound biosynthetic process 6.96% (8/115) 2.52 6.8e-05 0.002586
GO:0018130 heterocycle biosynthetic process 6.96% (8/115) 2.4 0.000125 0.003955
GO:1901362 organic cyclic compound biosynthetic process 6.96% (8/115) 2.32 0.000186 0.005046
GO:0009058 biosynthetic process 13.04% (15/115) 1.49 0.000258 0.005448
GO:0016070 RNA metabolic process 6.96% (8/115) 2.25 0.000251 0.005956
GO:0009059 macromolecule biosynthetic process 6.09% (7/115) 2.08 0.001287 0.024449
GO:0015399 primary active transmembrane transporter activity 2.61% (3/115) 3.5 0.002091 0.03056
GO:0042626 ATPase-coupled transmembrane transporter activity 2.61% (3/115) 3.5 0.002091 0.03056
GO:0042168 heme metabolic process 1.74% (2/115) 4.82 0.001813 0.031308
GO:0044271 cellular nitrogen compound biosynthetic process 6.96% (8/115) 1.77 0.002321 0.031493
GO:0016887 ATPase 6.09% (7/115) 1.85 0.003175 0.037703
GO:0042440 pigment metabolic process 1.74% (2/115) 4.5 0.002986 0.037823
GO:0006778 porphyrin-containing compound metabolic process 1.74% (2/115) 4.24 0.004427 0.046734
GO:0006826 iron ion transport 1.74% (2/115) 4.24 0.004427 0.046734
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Clostridioides difficile HCCA Cluster_33 0.027 OrthoFinder Compare
Clostridioides difficile HCCA Cluster_37 0.027 OrthoFinder Compare
Escherichia coli HCCA Cluster_1 0.03 OrthoFinder Compare
Escherichia coli HCCA Cluster_2 0.047 OrthoFinder Compare
Escherichia coli HCCA Cluster_3 0.036 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_17 0.053 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_36 0.043 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_42 0.033 OrthoFinder Compare
Listeria monocytogenes HCCA Cluster_15 0.029 OrthoFinder Compare
Mycobacterium tuberculosis HCCA Cluster_3 0.029 OrthoFinder Compare
Neisseria gonorrhoeae HCCA Cluster_16 0.032 OrthoFinder Compare
Pseudomonas aeruginosa HCCA Cluster_2 0.031 OrthoFinder Compare
Pseudomonas aeruginosa HCCA Cluster_11 0.033 OrthoFinder Compare
Pseudomonas aeruginosa HCCA Cluster_12 0.036 OrthoFinder Compare
Pseudomonas aeruginosa HCCA Cluster_15 0.028 OrthoFinder Compare
Pseudomonas aeruginosa HCCA Cluster_19 0.031 OrthoFinder Compare
Pseudomonas aeruginosa HCCA Cluster_33 0.031 OrthoFinder Compare
Pseudomonas aeruginosa HCCA Cluster_50 0.038 OrthoFinder Compare
Pseudomonas aeruginosa HCCA Cluster_74 0.034 OrthoFinder Compare
Salmonella enterica HCCA Cluster_6 0.039 OrthoFinder Compare
Salmonella enterica HCCA Cluster_33 0.029 OrthoFinder Compare
Salmonella enterica HCCA Cluster_43 0.066 OrthoFinder Compare
Staphylococcus aureus HCCA Cluster_12 0.033 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_2 0.046 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_3 0.058 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_10 0.057 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_25 0.031 OrthoFinder Compare
Sequences (115) (download table)

InterPro Domains

GO Terms

Family Terms