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  5. AAC76196

AAC76196 (deaD, b3162)


Aliases : deaD, b3162

Description : ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box helicase, DbpA RNA binding domain, Cold shock protein DEAD box A, Helicase conserved C-terminal domain [Interproscan].


Gene families : OG_02_0000033 (OrthoFinder) Phylogenetic Tree(s): OG0000033_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAC76196
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
AAL19757 STM0820, rhlE putative ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH... 0.14 OrthoFinder
AAL21537 STM2643, srmB ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... 0.1 OrthoFinder
AAL22152 STM3280, deaD cysteine sulfinate desulfinase [Ensembl]. DEAD/DEAH box... 0.12 OrthoFinder
AAL22764 STM3914, rhlB putative helicase [Ensembl]. DEAD/DEAH box helicase,... 0.05 OrthoFinder
AEA93263 srmB, OG1RF_10576 ATP-dependent RNA helicase DeaD [Ensembl]. DEAD/DEAH box... 0.03 OrthoFinder
AEA93852 OG1RF_11165 DEAD/DEAH box family ATP-dependent RNA helicase... 0.04 OrthoFinder
AGT22394 N559_0597, DeaD ATP-dependent RNA helicase DeaD [Ensembl]. DbpA RNA... 0.07 OrthoFinder
AGT23114 N559_1352, SrmB ATP-dependent RNA helicase SrmB [Ensembl]. Helicase... 0.05 OrthoFinder
AGT24551 N559_2882, DbpA ATP-dependent RNA helicase DbpA [Ensembl]. DbpA RNA... 0.04 OrthoFinder
AGT25154 N559_3505, RhlE ATP-dependent RNA helicase RhlE [Ensembl]. Helicase... 0.06 OrthoFinder
AGT26585 N559_5004, RhlB ATP-dependent RNA helicase RhlB [Ensembl]. Helicase... 0.04 OrthoFinder
AKI48814 L2625_00887 ATP-dependent RNA helicase [Ensembl]. Helicase,... 0.04 OrthoFinder
AKI49240 dbpA, L2625_01332 ATP-dependent RNA helicase [Ensembl]. Helicase,... 0.05 OrthoFinder
AKI49447 L2625_01548 ATP-dependent RNA helicase, putative [Ensembl].... 0.03 OrthoFinder
AKI49716 L2625_01857 ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... 0.04 OrthoFinder
AKP15465 rhlE_2, WX61_01419 ATP-dependent RNA helicase RhlE [Ensembl]. DEAD/DEAH box... 0.04 OrthoFinder
CCG27185 YqfR ATP-dependent RNA helicase YqfR [Ensembl]. DEAD/DEAH box... 0.03 OrthoFinder
CCG27251 No alias Cold-shock DEAD-box protein A [Ensembl]. DEAD/DEAH box... 0.06 OrthoFinder
CCL16938 BN171_1020005 Putative ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH... 0.05 OrthoFinder
CCP46027 rhlE, Rv3211 Probable ATP-dependent RNA helicase RhlE [Ensembl].... 0.03 OrthoFinder
CPC81511 cshB, ERS093114_01388 ATP-dependent RNA helicase YqfR [Ensembl]. DEAD/DEAH box... 0.05 OrthoFinder
CPD23408 ERS093114_02346 ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... 0.02 OrthoFinder
CRO88221 rhlE_2 ATP-dependent RNA helicase RhlE [Ensembl]. DEAD/DEAH box... 0.04 OrthoFinder
CRP17660 rhlE_3 ATP-dependent RNA helicase RhlE [Ensembl]. DEAD/DEAH box... 0.04 OrthoFinder
CRP22862 deaD Cold-shock DEAD box protein A [Ensembl]. DEAD/DEAH box... 0.1 OrthoFinder
EDJ90863 CGSHi22421_05540 preprotein translocase subunit SecF [Ensembl]. DEAD/DEAH... 0.09 OrthoFinder
EDJ91675 CGSHi22421_07968 ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... 0.03 OrthoFinder
KNA49674 VCV51_030219 DEAD/DEAH box helicase [Ensembl]. DEAD/DEAH box... 0.03 OrthoFinder
KNA55003 VCV51_031733 DEAD/DEAH box helicase [Ensembl]. DEAD/DEAH box... 0.11 OrthoFinder
KNA57620 VCV51_030433 DEAD/DEAH box helicase [Ensembl]. DEAD/DEAH box... 0.1 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004127 cytidylate kinase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008883 glutamyl-tRNA reductase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0043647 inositol phosphate metabolic process IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Enrichment
BP GO:0046855 inositol phosphate dephosphorylation IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
BP GO:0071545 inositol phosphate catabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 232 340
IPR021046 Cold-shock_DEAD_Abox_C 568 629
IPR011545 DEAD/DEAH_box_helicase_dom 31 195
IPR005580 DbpA/CsdA_RNA-bd_dom 489 558
UniProtKB P0A9P6