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  5. AKP14165

AKP14165 (mfd, WX61_00076)


Aliases : mfd, WX61_00076

Description : Transcription-repair-coupling factor [Ensembl]. CarD-like/TRCF domain, DEAD/DEAH box helicase, UvrB interaction domain, Helicase conserved C-terminal domain [Interproscan].


Gene families : OG_02_0000637 (OrthoFinder) Phylogenetic Tree(s): OG0000637_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AKP14165
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AAC74198 mfd, b1114 transcription-repair coupling factor [Ensembl].... 0.03 OrthoFinder
AAL20145 STM1216, mfd transcription-repair coupling factor [Ensembl].... 0.05 OrthoFinder
AEA92888 trcF, OG1RF_10201 transcription-repair coupling factor [Ensembl].... 0.02 OrthoFinder
CCL19970 mfd, BN171_3610013 Transcription-repair coupling factor (TRCF ATP-dependent... 0.04 OrthoFinder
CPD35390 mfd, ERS093114_02650 Transcription-repair coupling factor [Ensembl].... 0.04 OrthoFinder
EDJ91013 CGSHi22421_02786 transcription-repair coupling factor [Ensembl].... 0.04 OrthoFinder
KNA59432 VCV51_031278 transcription-repair coupling factor [Ensembl].... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0003941 L-serine ammonia-lyase activity IEP Enrichment
MF GO:0003989 acetyl-CoA carboxylase activity IEP Enrichment
MF GO:0004089 carbonate dehydratase activity IEP Enrichment
MF GO:0004140 dephospho-CoA kinase activity IEP Enrichment
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Enrichment
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Enrichment
CC GO:0009317 acetyl-CoA carboxylase complex IEP Enrichment
BP GO:0010033 response to organic substance IEP Enrichment
BP GO:0015936 coenzyme A metabolic process IEP Enrichment
BP GO:0015937 coenzyme A biosynthetic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016421 CoA carboxylase activity IEP Enrichment
MF GO:0016744 transketolase or transaldolase activity IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0016841 ammonia-lyase activity IEP Enrichment
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Enrichment
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0042221 response to chemical IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0070402 NADPH binding IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
InterPro domains Description Start Stop
IPR005118 TRCF_C 1091 1182
IPR001650 Helicase_C 889 992
IPR003711 CarD-like/TRCF_domain 564 658
IPR041471 UvrB_inter 125 212
IPR011545 DEAD/DEAH_box_helicase_dom 688 848
No external refs found!