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  5. CPC32854

CPC32854 (parE, ERS093114_00063)


Aliases : parE, ERS093114_00063

Description : Topoisomerase IV subunit B [Ensembl]. Toprim domain, Histidine kinase-, DNA gyrase B subunit [Interproscan].


Gene families : OG_02_0000123 (OrthoFinder) Phylogenetic Tree(s): OG0000123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CPC32854
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AAC76066 parE, b3030 DNA topoisomerase IV, subunit B [Ensembl]. Toprim... 0.04 OrthoFinder
AAK99519 spr0715, gyrB DNA gyrase [Ensembl]. Toprim domain, Histidine kinase-,... 0.05 OrthoFinder
AAL22055 STM3181, parE DNA topoisomerase IV, subunit B [Ensembl]. Toprim... 0.06 OrthoFinder
AAL22694 STM3835, gyrB DNA gyrase, subunit B [Ensembl]. Toprim domain,... 0.05 OrthoFinder
AAT48201 gyrB, b3699 DNA gyrase, subunit B [Ensembl]. Toprim domain,... 0.04 OrthoFinder
ADK86799 parE, MPNE_0140 DNA topoisomerase IV, B subunit [Ensembl]. DNA gyrase B,... 0.02 OrthoFinder
AGT21871 N559_0038 DNA gyrase subunit B [Ensembl]. DNA gyrase B subunit... 0.06 OrthoFinder
AGT22529 N559_0736 DNA topoisomerase IV subunit B [Ensembl]. Toprim domain,... 0.05 OrthoFinder
AKI47982 gyrB, L2625_00006 DNA gyrase, B subunit [Ensembl]. DNA topoisomerase,... 0.05 OrthoFinder
AKI49282 parE, L2625_01376 DNA topoisomerase IV, B subunit [Ensembl]. DNA... 0.07 OrthoFinder
AKP14396 parE, WX61_00313 DNA topoisomerase 4 subunit B [Ensembl]. Toprim domain,... 0.04 OrthoFinder
CCL16917 gyrB, BN171_10005 DNA gyrase subunit B [Ensembl]. DNA gyrase B, Toprim... 0.05 OrthoFinder
CRO55054 parE DNA topoisomerase 4 subunit B [Ensembl]. Toprim domain,... 0.03 OrthoFinder
EDJ89973 CGSHi22421_07703 DNA topoisomerase IV subunit B [Ensembl]. Toprim domain,... 0.03 OrthoFinder
EDJ90160 gyrB, CGSHi22421_06007 DNA gyrase subunit B [Ensembl]. DNA gyrase B, Histidine... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004797 thymidine kinase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008171 O-methyltransferase activity IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
MF GO:0009378 four-way junction helicase activity IEP Enrichment
CC GO:0009379 Holliday junction helicase complex IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019136 deoxynucleoside kinase activity IEP Enrichment
MF GO:0019206 nucleoside kinase activity IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0033202 DNA helicase complex IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR002288 DNA_gyrase_B_C 570 631
IPR006171 TOPRIM_domain 425 535
IPR013506 Topo_IIA_bsu_dom2 224 394
IPR003594 HATPase_C 32 175
No external refs found!