CRP60047


Description : cobalamin biosynthesis protein [Ensembl]. CobD/Cbib protein, Regulatory signalling modulator protein AmpE [Interproscan].


Gene families : OG_02_0001823 (OrthoFinder) Phylogenetic Tree(s): OG0001823_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CRP60047
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AAL20938 STM2034, cibB synthesis of vitamin B12 adenosyl cobalamide precursor... 0.07 OrthoFinder
AGT22822 N559_1041, CobD cobalamin biosynthesis protein CobD [Ensembl]. 0.06 OrthoFinder
AKI49120 cobD, L2625_01209 cobalamin biosynthesis protein [Ensembl]. Cobalamin... 0.05 OrthoFinder
CCL19881 cbiB, BN171_3590002 Cobalamin biosynthesis protein CbiB, CobD/CbiB family... 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0009236 cobalamin biosynthetic process IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0048472 threonine-phosphate decarboxylase activity IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004529 exodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
MF GO:0008855 exodeoxyribonuclease VII activity IEP Enrichment
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP Enrichment
MF GO:0008939 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity IEP Enrichment
MF GO:0008990 rRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016867 intramolecular transferase activity, transferring acyl groups IEP Enrichment
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016993 precorrin-8X methylmutase activity IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
MF GO:0043752 adenosylcobinamide kinase activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
InterPro domains Description Start Stop
IPR031347 AmpE 156 229
IPR004485 Cobalamin_biosynth_CobD/CbiB 7 290