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  5. CCL20580

CCL20580 (rpsE, BN171_70020)


Aliases : rpsE, BN171_70020

Description : 30S ribosomal protein S5 [Ensembl]. Ribosomal protein S5 [Interproscan].


Gene families : OG_02_0000394 (OrthoFinder) Phylogenetic Tree(s): OG0000394_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCL20580
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AAC76328 rpsE, b3303 30S ribosomal subunit protein S5 [Ensembl]. Ribosomal... 0.23 OrthoFinder
AAK99010 spr0206, rpsE 30S Ribosomal protein S5 [Ensembl]. Ribosomal protein S5... 0.23 OrthoFinder
AAL22286 STM3423, rpsE 30S ribosomal subunit protein S5 [Ensembl]. Ribosomal... 0.28 OrthoFinder
ADK86962 rpsE, MPNE_0211 ribosomal protein S5 [Ensembl]. Ribosomal protein S5... 0.16 OrthoFinder
AEA92855 rpsE, OG1RF_10168 30S ribosomal protein S5 [Ensembl]. Ribosomal protein S5... 0.23 OrthoFinder
AGT22259 N559_0451 30S ribosomal protein S5 [Ensembl]. C-terminal domain,... 0.2 OrthoFinder
AHY40875 rpsE, CJ8421_08515 30S ribosomal protein S5 [Ensembl]. Ribosomal protein S5... 0.29 OrthoFinder
AKI50550 rpsE, L2625_02760 ribosomal protein S5 [Ensembl]. Ribosomal protein S5... 0.24 OrthoFinder
AKP15139 rpsE, WX61_01085 30S ribosomal protein S5 [Ensembl]. Ribosomal protein S5... 0.11 OrthoFinder
CBI65734 rpsE, HPB8_177 small subunit ribosomal protein S5 [Ensembl]. Ribosomal... 0.23 OrthoFinder
CCG27396 No alias SSU ribosomal protein S5p (S2e) [Ensembl]. Ribosomal... 0.16 OrthoFinder
CCP43465 rpsE, Rv0721 30S ribosomal protein S5 RpsE [Ensembl]. Ribosomal... 0.13 OrthoFinder
CPD14101 rpsE, ERS093114_02139 30S ribosomal protein S5 [Ensembl]. Ribosomal protein S5... 0.27 OrthoFinder
CRO74251 rpsE 30S ribosomal protein S5 [Ensembl]. Ribosomal protein S5... 0.22 OrthoFinder
EDJ91373 rpsE, CGSHi22421_04698 30S ribosomal protein S5 [Ensembl]. Ribosomal protein S5... 0.29 OrthoFinder
KNA54989 VCV51_033172 ribosomal protein S5 [Ensembl]. Ribosomal protein S5... 0.21 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004497 monooxygenase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0004820 glycine-tRNA ligase activity IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0018580 nitronate monooxygenase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR013810 Ribosomal_S5_N 14 78
IPR005324 Ribosomal_S5_C 90 160
UniProtKB U3X3D2