Coexpression cluster: Cluster_12 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0043038 amino acid activation 9.33% (7/75) 3.52 1e-06 5.4e-05
GO:0043039 tRNA aminoacylation 9.33% (7/75) 3.52 1e-06 5.4e-05
GO:0016875 ligase activity, forming carbon-oxygen bonds 9.33% (7/75) 3.52 1e-06 5.4e-05
GO:0004812 aminoacyl-tRNA ligase activity 9.33% (7/75) 3.52 1e-06 5.4e-05
GO:0006418 tRNA aminoacylation for protein translation 9.33% (7/75) 3.59 1e-06 0.000185
GO:0009987 cellular process 38.67% (29/75) 1.16 6e-06 0.00022
GO:0034645 cellular macromolecule biosynthetic process 13.33% (10/75) 2.52 6e-06 0.000223
GO:0140098 catalytic activity, acting on RNA 10.67% (8/75) 2.78 1.3e-05 0.000258
GO:0043170 macromolecule metabolic process 22.67% (17/75) 1.68 1e-05 0.00027
GO:0006399 tRNA metabolic process 9.33% (7/75) 3.05 1.2e-05 0.000274
GO:1901564 organonitrogen compound metabolic process 21.33% (16/75) 1.74 1.2e-05 0.000289
GO:0140101 catalytic activity, acting on a tRNA 9.33% (7/75) 3.1 1e-05 0.000292
GO:0044237 cellular metabolic process 28.0% (21/75) 1.37 2.3e-05 0.000309
GO:0043604 amide biosynthetic process 10.67% (8/75) 2.68 2.2e-05 0.000321
GO:0043043 peptide biosynthetic process 10.67% (8/75) 2.68 2.2e-05 0.000321
GO:0006518 peptide metabolic process 10.67% (8/75) 2.68 2.2e-05 0.000321
GO:0009059 macromolecule biosynthetic process 13.33% (10/75) 2.34 1.8e-05 0.00033
GO:0034641 cellular nitrogen compound metabolic process 22.67% (17/75) 1.61 1.9e-05 0.000334
GO:0043603 cellular amide metabolic process 10.67% (8/75) 2.64 2.7e-05 0.000342
GO:0034660 ncRNA metabolic process 9.33% (7/75) 2.87 3.1e-05 0.000376
GO:0016874 ligase activity 9.33% (7/75) 2.66 8.1e-05 0.00094
GO:0043232 intracellular non-membrane-bounded organelle 9.33% (7/75) 2.52 0.000158 0.00124
GO:0003735 structural constituent of ribosome 9.33% (7/75) 2.52 0.000158 0.00124
GO:0005198 structural molecule activity 9.33% (7/75) 2.52 0.000158 0.00124
GO:0043228 non-membrane-bounded organelle 9.33% (7/75) 2.52 0.000158 0.00124
GO:0043226 organelle 9.33% (7/75) 2.52 0.000158 0.00124
GO:0043229 intracellular organelle 9.33% (7/75) 2.52 0.000158 0.00124
GO:0005840 ribosome 9.33% (7/75) 2.59 0.000115 0.001265
GO:0006412 translation 9.33% (7/75) 2.55 0.000135 0.001311
GO:0006520 cellular amino acid metabolic process 9.33% (7/75) 2.55 0.000135 0.001311
GO:0044249 cellular biosynthetic process 16.0% (12/75) 1.73 0.000176 0.001337
GO:0003674 molecular_function 60.0% (45/75) 0.63 0.00013 0.001375
GO:1901576 organic substance biosynthetic process 16.0% (12/75) 1.71 0.000205 0.001513
GO:0071704 organic substance metabolic process 29.33% (22/75) 1.1 0.00025 0.001783
GO:0110165 cellular anatomical entity 26.67% (20/75) 1.17 0.000273 0.001844
GO:0016070 RNA metabolic process 10.67% (8/75) 2.2 0.000266 0.001844
GO:0005488 binding 34.67% (26/75) 0.96 0.000287 0.001887
GO:0009058 biosynthetic process 17.33% (13/75) 1.56 0.000323 0.002069
GO:0097159 organic cyclic compound binding 30.67% (23/75) 1.03 0.000369 0.002241
GO:1901363 heterocyclic compound binding 30.67% (23/75) 1.03 0.000369 0.002241
GO:0032553 ribonucleotide binding 20.0% (15/75) 1.39 0.000387 0.002292
GO:0044267 cellular protein metabolic process 9.33% (7/75) 2.27 0.000486 0.002811
GO:0005575 cellular_component 26.67% (20/75) 1.1 0.000546 0.003013
GO:0008152 metabolic process 30.67% (23/75) 0.99 0.00054 0.003049
GO:0044260 cellular macromolecule metabolic process 13.33% (10/75) 1.75 0.000581 0.003138
GO:0044271 cellular nitrogen compound biosynthetic process 12.0% (9/75) 1.86 0.000634 0.003144
GO:0019752 carboxylic acid metabolic process 9.33% (7/75) 2.21 0.000621 0.003144
GO:0043436 oxoacid metabolic process 9.33% (7/75) 2.21 0.000621 0.003144
GO:0006807 nitrogen compound metabolic process 22.67% (17/75) 1.22 0.000605 0.003195
GO:0006426 glycyl-tRNA aminoacylation 2.67% (2/75) 5.1 0.000835 0.003622
GO:0004820 glycine-tRNA ligase activity 2.67% (2/75) 5.1 0.000835 0.003622
GO:0006414 translational elongation 2.67% (2/75) 5.1 0.000835 0.003622
GO:0003746 translation elongation factor activity 2.67% (2/75) 5.1 0.000835 0.003622
GO:0032555 purine ribonucleotide binding 18.67% (14/75) 1.33 0.000918 0.003658
GO:0035639 purine ribonucleoside triphosphate binding 18.67% (14/75) 1.33 0.000918 0.003658
GO:0000166 nucleotide binding 20.0% (15/75) 1.28 0.000897 0.003693
GO:1901265 nucleoside phosphate binding 20.0% (15/75) 1.28 0.000897 0.003693
GO:0043167 ion binding 22.67% (17/75) 1.17 0.000872 0.003718
GO:0006082 organic acid metabolic process 9.33% (7/75) 2.16 0.000785 0.003739
GO:0008150 biological_process 46.67% (35/75) 0.68 0.0008 0.00374
GO:0097367 carbohydrate derivative binding 20.0% (15/75) 1.3 0.000772 0.00375
GO:0017076 purine nucleotide binding 18.67% (14/75) 1.33 0.000968 0.003792
GO:0032559 adenyl ribonucleotide binding 17.33% (13/75) 1.38 0.001076 0.004084
GO:0005524 ATP binding 17.33% (13/75) 1.38 0.001076 0.004084
GO:0030554 adenyl nucleotide binding 17.33% (13/75) 1.37 0.001136 0.004247
GO:1901566 organonitrogen compound biosynthetic process 10.67% (8/75) 1.82 0.001596 0.005875
GO:0044238 primary metabolic process 24.0% (18/75) 1.05 0.001667 0.005958
GO:0043168 anion binding 20.0% (15/75) 1.19 0.001659 0.006016
GO:0042626 ATPase-coupled transmembrane transporter activity 5.33% (4/75) 2.86 0.001836 0.006466
GO:0015399 primary active transmembrane transporter activity 5.33% (4/75) 2.78 0.002245 0.007793
GO:0036094 small molecule binding 20.0% (15/75) 1.1 0.003155 0.010649
GO:0003723 RNA binding 8.0% (6/75) 2.02 0.003149 0.010776
GO:0019538 protein metabolic process 9.33% (7/75) 1.76 0.003966 0.013203
GO:0005737 cytoplasm 5.33% (4/75) 2.52 0.004508 0.014804
GO:0015103 inorganic anion transmembrane transporter activity 2.67% (2/75) 4.1 0.004821 0.015621
GO:0090304 nucleic acid metabolic process 10.67% (8/75) 1.55 0.005209 0.016654
GO:0019843 rRNA binding 2.67% (2/75) 3.78 0.007884 0.024563
GO:0015698 inorganic anion transport 2.67% (2/75) 3.78 0.007884 0.024563
GO:0045182 translation regulator activity 2.67% (2/75) 3.52 0.011605 0.034814
GO:0008135 translation factor activity, RNA binding 2.67% (2/75) 3.52 0.011605 0.034814
GO:0090079 translation regulator activity, nucleic acid binding 2.67% (2/75) 3.52 0.011605 0.034814
GO:0044281 small molecule metabolic process 10.67% (8/75) 1.35 0.011875 0.03519
GO:0008509 anion transmembrane transporter activity 2.67% (2/75) 3.3 0.015942 0.046675
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Campylobacter jejuni HCCA Cluster_8 0.038 OrthoFinder Compare
Campylobacter jejuni HCCA Cluster_12 0.034 OrthoFinder Compare
Campylobacter jejuni HCCA Cluster_14 0.03 OrthoFinder Compare
Clostridioides difficile HCCA Cluster_2 0.063 OrthoFinder Compare
Clostridioides difficile HCCA Cluster_6 0.029 OrthoFinder Compare
Clostridioides difficile HCCA Cluster_14 0.035 OrthoFinder Compare
Clostridioides difficile HCCA Cluster_19 0.031 OrthoFinder Compare
Clostridioides difficile HCCA Cluster_30 0.039 OrthoFinder Compare
Clostridioides difficile HCCA Cluster_41 0.034 OrthoFinder Compare
Escherichia coli HCCA Cluster_1 0.059 OrthoFinder Compare
Escherichia coli HCCA Cluster_37 0.07 OrthoFinder Compare
Haemophilus influenzae HCCA Cluster_3 0.037 OrthoFinder Compare
Haemophilus influenzae HCCA Cluster_7 0.031 OrthoFinder Compare
Haemophilus influenzae HCCA Cluster_23 0.042 OrthoFinder Compare
Helicobacter pylori HCCA Cluster_9 0.041 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_12 0.045 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_26 0.035 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_38 0.034 OrthoFinder Compare
Listeria monocytogenes HCCA Cluster_18 0.106 OrthoFinder Compare
Listeria monocytogenes HCCA Cluster_25 0.038 OrthoFinder Compare
Listeria monocytogenes HCCA Cluster_29 0.035 OrthoFinder Compare
Mycoplasma pneumoniae HCAA Cluster_3 0.057 OrthoFinder Compare
Mycoplasma pneumoniae HCAA Cluster_5 0.029 OrthoFinder Compare
Mycobacterium tuberculosis HCCA Cluster_25 0.03 OrthoFinder Compare
Neisseria gonorrhoeae HCCA Cluster_6 0.03 OrthoFinder Compare
Neisseria gonorrhoeae HCCA Cluster_7 0.037 OrthoFinder Compare
Neisseria gonorrhoeae HCCA Cluster_12 0.042 OrthoFinder Compare
Pseudomonas aeruginosa HCCA Cluster_22 0.057 OrthoFinder Compare
Pseudomonas aeruginosa HCCA Cluster_47 0.035 OrthoFinder Compare
Salmonella enterica HCCA Cluster_23 0.078 OrthoFinder Compare
Salmonella enterica HCCA Cluster_30 0.03 OrthoFinder Compare
Staphylococcus aureus HCCA Cluster_15 0.031 OrthoFinder Compare
Staphylococcus aureus HCCA Cluster_17 0.029 OrthoFinder Compare
Staphylococcus aureus HCCA Cluster_19 0.053 OrthoFinder Compare
Staphylococcus aureus HCCA Cluster_24 0.044 OrthoFinder Compare
Streptococcus pneumoniae HCCA Cluster_13 0.065 OrthoFinder Compare
Streptococcus pneumoniae HCCA Cluster_14 0.053 OrthoFinder Compare
Streptococcus pneumoniae HCCA Cluster_18 0.045 OrthoFinder Compare
Streptococcus pneumoniae HCCA Cluster_22 0.035 OrthoFinder Compare
Streptococcus pyogenes HCAA Cluster_4 0.057 OrthoFinder Compare
Streptococcus pyogenes HCAA Cluster_10 0.029 OrthoFinder Compare
Streptococcus pyogenes HCAA Cluster_11 0.073 OrthoFinder Compare
Streptococcus pyogenes HCAA Cluster_15 0.032 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_1 0.029 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_8 0.055 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_24 0.051 OrthoFinder Compare
Sequences (75) (download table)

InterPro Domains

GO Terms

Family Terms