CCL20591 (rpoA, BN171_70031)


Aliases : rpoA, BN171_70031

Description : DNA-directed RNA polymerase subunit alpha [Ensembl]. RNA polymerase Rpb3/Rpb11 dimerisation domain, RNA polymerase Rpb3/RpoA insert domain, Bacterial RNA polymerase [Interproscan].


Gene families : OG_02_0000391 (OrthoFinder) Phylogenetic Tree(s): OG0000391_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCL20591
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AAC76320 rpoA, b3295 RNA polymerase, alpha subunit [Ensembl]. Bacterial RNA... 0.23 OrthoFinder
AAK99019 spr0215, rpoA RNA polymerase alpha subunit [Ensembl]. Bacterial RNA... 0.19 OrthoFinder
AAL22278 STM3415, rpoA RNA polymerase, alpha subunit [Ensembl]. Bacterial RNA... 0.26 OrthoFinder
ADK86748 rpoA, MPNE_0220 DNA-directed RNA polymerase, alpha subunit [Ensembl].... 0.12 OrthoFinder
AEA92864 rpoA, OG1RF_10177 DNA-directed RNA polymerase subunit alpha [Ensembl].... 0.1 OrthoFinder
AGT22265 N559_0457 DNA-directed RNA polymerase subunit alpha [Ensembl]. RNA... 0.19 OrthoFinder
AHY40768 CJ8421_07980 DNA-directed RNA polymerase subunit alpha [Ensembl].... 0.13 OrthoFinder
AKI50541 rpoA, L2625_02751 DNA-directed RNA polymerase, alpha subunit [Ensembl].... 0.19 OrthoFinder
AKP15146 rpoA, WX61_01092 DNA-directed RNA polymerase subunit alpha [Ensembl].... 0.1 OrthoFinder
CBI65743 rpoA, HPB8_186 DNA-directed RNA polymerase subunit alpha [Ensembl].... 0.11 OrthoFinder
CCG27405 No alias DNA-directed RNA polymerase alpha subunit [Ensembl].... 0.12 OrthoFinder
CCP46279 rpoA, Rv3457c Probable DNA-directed RNA polymerase (alpha chain) RpoA... 0.15 OrthoFinder
CPD14384 rpoA, ERS093114_02148 DNA-directed RNA polymerase alpha subunit [Ensembl].... 0.22 OrthoFinder
CRO74499 rpoA DNA-directed RNA polymerase subunit alpha [Ensembl].... 0.21 OrthoFinder
EDJ91381 CGSHi22421_04738 DNA-directed RNA polymerase subunit alpha [Ensembl].... 0.22 OrthoFinder
KNA54997 VCV51_033180 DNA-directed RNA polymerase [Ensembl]. Bacterial RNA... 0.22 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001514 selenocysteine incorporation IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004071 aspartate-ammonia ligase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006451 translational readthrough IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008616 queuosine biosynthetic process IEP Enrichment
BP GO:0009119 ribonucleoside metabolic process IEP Enrichment
BP GO:0009163 nucleoside biosynthetic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042455 ribonucleoside biosynthetic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046116 queuosine metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901659 glycosyl compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR011262 DNA-dir_RNA_pol_insert 59 152
IPR011263 DNA-dir_RNA_pol_RpoA/D/Rpb3 26 221
IPR011260 RNAP_asu_C 240 305
UniProtKB U3X2P7