Coexpression cluster: Cluster_35 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003887 DNA-directed DNA polymerase activity 2.5% (5/200) 4.76 0.0 2.9e-05
GO:0034061 DNA polymerase activity 2.5% (5/200) 4.76 0.0 2.9e-05
GO:0043436 oxoacid metabolic process 7.5% (15/200) 2.19 1e-06 7.1e-05
GO:0019752 carboxylic acid metabolic process 7.5% (15/200) 2.19 1e-06 7.1e-05
GO:0032553 ribonucleotide binding 13.0% (26/200) 1.51 1e-06 8.6e-05
GO:0140097 catalytic activity, acting on DNA 5.0% (10/200) 2.76 1e-06 8.9e-05
GO:0006082 organic acid metabolic process 7.5% (15/200) 2.1 2e-06 9.3e-05
GO:0097367 carbohydrate derivative binding 13.0% (26/200) 1.45 2e-06 0.0001
GO:0035639 purine ribonucleoside triphosphate binding 12.0% (24/200) 1.53 2e-06 0.00011
GO:0017076 purine nucleotide binding 12.0% (24/200) 1.48 4e-06 0.000143
GO:0032555 purine ribonucleotide binding 12.0% (24/200) 1.49 4e-06 0.000147
GO:0030554 adenyl nucleotide binding 11.0% (22/200) 1.51 8e-06 0.000216
GO:0032559 adenyl ribonucleotide binding 11.0% (22/200) 1.51 8e-06 0.000219
GO:0005524 ATP binding 11.0% (22/200) 1.51 8e-06 0.000219
GO:0016779 nucleotidyltransferase activity 3.5% (7/200) 3.08 1.2e-05 0.000308
GO:0006520 cellular amino acid metabolic process 5.5% (11/200) 2.22 2e-05 0.000466
GO:0043167 ion binding 16.5% (33/200) 1.05 4e-05 0.000842
GO:0036094 small molecule binding 15.0% (30/200) 1.12 3.9e-05 0.00087
GO:0043168 anion binding 14.0% (28/200) 1.14 5.7e-05 0.001125
GO:0003916 DNA topoisomerase activity 2.0% (4/200) 3.86 9.6e-05 0.001518
GO:0006265 DNA topological change 2.0% (4/200) 3.86 9.6e-05 0.001518
GO:0051276 chromosome organization 2.0% (4/200) 3.86 9.6e-05 0.001518
GO:0071103 DNA conformation change 2.0% (4/200) 3.86 9.6e-05 0.001518
GO:0071704 organic substance metabolic process 18.0% (36/200) 0.94 8.3e-05 0.001569
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity 1.5% (3/200) 4.61 0.000112 0.001623
GO:0008408 3'-5' exonuclease activity 1.5% (3/200) 4.61 0.000112 0.001623
GO:0006260 DNA replication 2.5% (5/200) 3.26 0.000119 0.001666
GO:1901265 nucleoside phosphate binding 13.0% (26/200) 1.12 0.00013 0.00169
GO:0000166 nucleotide binding 13.0% (26/200) 1.12 0.00013 0.00169
GO:0044281 small molecule metabolic process 8.0% (16/200) 1.49 0.000163 0.00206
GO:0044237 cellular metabolic process 15.5% (31/200) 0.93 0.000305 0.003713
GO:0006996 organelle organization 2.0% (4/200) 3.32 0.000496 0.005865
GO:0008152 metabolic process 19.5% (39/200) 0.76 0.000568 0.006135
GO:0043039 tRNA aminoacylation 2.5% (5/200) 2.82 0.000557 0.00619
GO:0043038 amino acid activation 2.5% (5/200) 2.82 0.000557 0.00619
GO:0016875 ligase activity, forming carbon-oxygen bonds 2.5% (5/200) 2.76 0.000686 0.007008
GO:0004812 aminoacyl-tRNA ligase activity 2.5% (5/200) 2.76 0.000686 0.007008
GO:0044238 primary metabolic process 14.5% (29/200) 0.89 0.000818 0.007929
GO:0006807 nitrogen compound metabolic process 14.0% (28/200) 0.91 0.0008 0.007962
GO:0004527 exonuclease activity 1.5% (3/200) 3.8 0.000912 0.008406
GO:1901564 organonitrogen compound metabolic process 10.0% (20/200) 1.11 0.00091 0.008596
GO:0043170 macromolecule metabolic process 10.5% (21/200) 1.04 0.00122 0.010979
GO:0042398 cellular modified amino acid biosynthetic process 1.5% (3/200) 3.61 0.001426 0.012534
GO:0005488 binding 24.0% (48/200) 0.58 0.002046 0.01758
GO:0016743 carboxyl- or carbamoyltransferase activity 1.0% (2/200) 4.44 0.002759 0.019677
GO:0042575 DNA polymerase complex 1.0% (2/200) 4.44 0.002759 0.019677
GO:0009360 DNA polymerase III complex 1.0% (2/200) 4.44 0.002759 0.019677
GO:0015940 pantothenate biosynthetic process 1.0% (2/200) 4.44 0.002759 0.019677
GO:0016597 amino acid binding 1.0% (2/200) 4.44 0.002759 0.019677
GO:0015939 pantothenate metabolic process 1.0% (2/200) 4.44 0.002759 0.019677
GO:0061695 transferase complex, transferring phosphorus-containing groups 1.0% (2/200) 4.44 0.002759 0.019677
GO:0006575 cellular modified amino acid metabolic process 1.5% (3/200) 3.29 0.002919 0.020436
GO:0034660 ncRNA metabolic process 3.0% (6/200) 2.09 0.002617 0.021507
GO:0003824 catalytic activity 28.5% (57/200) 0.5 0.002613 0.021951
GO:0016874 ligase activity 3.5% (7/200) 1.83 0.003271 0.022482
GO:0006418 tRNA aminoacylation for protein translation 2.0% (4/200) 2.63 0.003427 0.023133
GO:0016853 isomerase activity 3.0% (6/200) 2.0 0.003621 0.024013
GO:0140101 catalytic activity, acting on a tRNA 2.5% (5/200) 2.22 0.003984 0.025527
GO:0006399 tRNA metabolic process 2.5% (5/200) 2.22 0.003984 0.025527
GO:0006139 nucleobase-containing compound metabolic process 7.5% (15/200) 1.08 0.004783 0.030133
GO:1901576 organic substance biosynthetic process 7.5% (15/200) 1.07 0.004978 0.030845
GO:0008094 ATPase, acting on DNA 1.5% (3/200) 3.03 0.005115 0.031182
GO:1990234 transferase complex 1.0% (2/200) 4.03 0.005406 0.03144
GO:0140535 intracellular protein-containing complex 1.0% (2/200) 4.03 0.005406 0.03144
GO:0009058 biosynthetic process 9.0% (18/200) 0.95 0.005302 0.031811
GO:0016887 ATPase 4.5% (9/200) 1.41 0.00648 0.037112
GO:0032787 monocarboxylic acid metabolic process 2.0% (4/200) 2.38 0.006582 0.037132
GO:0097159 organic cyclic compound binding 19.0% (38/200) 0.57 0.006905 0.037825
GO:1901363 heterocyclic compound binding 19.0% (38/200) 0.57 0.006905 0.037825
GO:0046394 carboxylic acid biosynthetic process 2.5% (5/200) 2.03 0.007136 0.038536
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Campylobacter jejuni HCCA Cluster_1 0.028 OrthoFinder Compare
Campylobacter jejuni HCCA Cluster_3 0.027 OrthoFinder Compare
Campylobacter jejuni HCCA Cluster_8 0.033 OrthoFinder Compare
Clostridioides difficile HCCA Cluster_2 0.033 OrthoFinder Compare
Clostridioides difficile HCCA Cluster_12 0.034 OrthoFinder Compare
Clostridioides difficile HCCA Cluster_37 0.036 OrthoFinder Compare
Enterococcus faecalis HCCA Cluster_2 0.035 OrthoFinder Compare
Enterococcus faecalis HCCA Cluster_13 0.028 OrthoFinder Compare
Enterococcus faecalis HCCA Cluster_15 0.027 OrthoFinder Compare
Enterococcus faecalis HCCA Cluster_21 0.034 OrthoFinder Compare
Escherichia coli HCCA Cluster_2 0.033 OrthoFinder Compare
Escherichia coli HCCA Cluster_3 0.029 OrthoFinder Compare
Escherichia coli HCCA Cluster_28 0.036 OrthoFinder Compare
Escherichia coli HCCA Cluster_29 0.027 OrthoFinder Compare
Escherichia coli HCCA Cluster_37 0.041 OrthoFinder Compare
Escherichia coli HCCA Cluster_39 0.037 OrthoFinder Compare
Escherichia coli HCCA Cluster_41 0.041 OrthoFinder Compare
Escherichia coli HCCA Cluster_45 0.03 OrthoFinder Compare
Haemophilus influenzae HCCA Cluster_2 0.032 OrthoFinder Compare
Haemophilus influenzae HCCA Cluster_3 0.039 OrthoFinder Compare
Haemophilus influenzae HCCA Cluster_6 0.037 OrthoFinder Compare
Haemophilus influenzae HCCA Cluster_9 0.03 OrthoFinder Compare
Haemophilus influenzae HCCA Cluster_11 0.046 OrthoFinder Compare
Helicobacter pylori HCCA Cluster_8 0.028 OrthoFinder Compare
Helicobacter pylori HCCA Cluster_10 0.032 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_2 0.048 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_11 0.034 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_29 0.046 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_40 0.032 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_44 0.042 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_45 0.034 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_46 0.04 OrthoFinder Compare
Listeria monocytogenes HCCA Cluster_15 0.03 OrthoFinder Compare
Listeria monocytogenes HCCA Cluster_18 0.029 OrthoFinder Compare
Listeria monocytogenes HCCA Cluster_20 0.029 OrthoFinder Compare
Listeria monocytogenes HCCA Cluster_26 0.029 OrthoFinder Compare
Neisseria gonorrhoeae HCCA Cluster_7 0.033 OrthoFinder Compare
Neisseria gonorrhoeae HCCA Cluster_8 0.043 OrthoFinder Compare
Neisseria gonorrhoeae HCCA Cluster_12 0.042 OrthoFinder Compare
Salmonella enterica HCCA Cluster_3 0.037 OrthoFinder Compare
Salmonella enterica HCCA Cluster_7 0.031 OrthoFinder Compare
Salmonella enterica HCCA Cluster_31 0.038 OrthoFinder Compare
Salmonella enterica HCCA Cluster_32 0.049 OrthoFinder Compare
Salmonella enterica HCCA Cluster_41 0.035 OrthoFinder Compare
Salmonella enterica HCCA Cluster_42 0.028 OrthoFinder Compare
Salmonella enterica HCCA Cluster_45 0.029 OrthoFinder Compare
Salmonella enterica HCCA Cluster_47 0.03 OrthoFinder Compare
Salmonella enterica HCCA Cluster_48 0.028 OrthoFinder Compare
Staphylococcus aureus HCCA Cluster_1 0.038 OrthoFinder Compare
Staphylococcus aureus HCCA Cluster_5 0.036 OrthoFinder Compare
Staphylococcus aureus HCCA Cluster_25 0.029 OrthoFinder Compare
Streptococcus pneumoniae HCCA Cluster_2 0.029 OrthoFinder Compare
Streptococcus pneumoniae HCCA Cluster_14 0.046 OrthoFinder Compare
Streptococcus pyogenes HCAA Cluster_4 0.039 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_1 0.08 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_5 0.031 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_11 0.045 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_22 0.051 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_23 0.028 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_25 0.028 OrthoFinder Compare
Sequences (200) (download table)

InterPro Domains

GO Terms

Family Terms